Libraries

Load the libraries

Packages versions

BioPython v1.79
re module v2.2.1
matplotlib v3.4.2
pandas v1.3.3
NumPy v1.21.2
SciPy v1.7.1

Python 3.8.12

Selected Jupyter core packages...
IPython          : 7.27.0
ipykernel        : 6.4.1
ipywidgets       : 7.6.5
jupyter_client   : 7.0.1
jupyter_core     : 4.8.1
jupyter_server   : 1.4.1
jupyterlab       : 3.1.7
nbclient         : 0.5.3
nbconvert        : 6.1.0
nbformat         : 5.1.3
notebook         : 6.4.3
qtconsole        : 5.1.1
traitlets        : 5.1.0

Load the data

Gram positive (n=11)

Gram negative (n=10)

Visualization: 1. Frequency plots, and 2. Normalized plots using Sliding window analysis

Frequency plots

/var/folders/qw/9wxdq28x5wgcw76z273w4lp00000gn/T/ipykernel_66797/801145161.py:6: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`).
  plt.figure(figsize=(15, 5), facecolor=(1, 1, 1))

Division by summed value normalization: MA_sum- SWAN plots

/var/folders/qw/9wxdq28x5wgcw76z273w4lp00000gn/T/ipykernel_66797/2759742482.py:11: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`).
  plt.figure(figsize=(15, 5), facecolor=(1, 1, 1))